OBO Foundry dashboard analysis¶

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/tmp/ipykernel_534/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           3
OWL Functional Syntax    1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 4 7837.00 5694.274200 2288.0 4586.00 6731.0 9982.00 15598.0
SubClassOf 4 1257.00 551.061400 518.0 995.75 1406.0 1667.25 1698.0
Declaration 4 1189.00 507.062784 531.0 1052.25 1228.5 1365.25 1768.0
DisjointClasses 3 21.50 17.330128 0.0 14.25 22.0 29.25 42.0
TransitiveObjectProperty 3 5.75 3.947573 0.0 5.25 7.0 7.50 9.0
EquivalentClasses 2 6.50 9.433981 0.0 0.00 3.0 9.50 20.0
IrrefexiveObjectProperty 2 1.25 1.892969 0.0 0.00 0.5 1.75 4.0
InverseObjectProperties 2 15.00 17.625739 0.0 0.00 13.0 28.00 34.0
FunctionalObjectProperty 2 2.50 3.000000 0.0 0.00 2.0 4.50 6.0
EquivalentObjectProperties 2 5.00 8.124038 0.0 0.00 1.5 6.50 17.0
SubPropertyChainOf 2 4.00 7.348469 0.0 0.00 0.5 4.50 15.0
SubObjectPropertyOf 2 45.00 51.961524 0.0 0.00 45.0 90.00 90.0
ObjectPropertyRange 2 32.75 41.692325 0.0 0.00 22.0 54.75 87.0
SymmetricObjectProperty 2 1.75 2.872281 0.0 0.00 0.5 2.25 6.0
ClassAssertion 2 5.00 9.345231 0.0 0.00 0.5 5.50 19.0
SubAnnotationPropertyOf 2 6.75 8.995369 0.0 0.00 4.0 10.75 19.0
ObjectPropertyDomain 2 36.00 44.369659 0.0 0.00 26.5 62.50 91.0
AsymmetricObjectProperty 1 1.50 3.000000 0.0 0.00 0.0 1.50 6.0
SubDataPropertyOf 1 2.75 5.500000 0.0 0.00 0.0 2.75 11.0
FunctionalDataProperty 1 1.50 3.000000 0.0 0.00 0.0 1.50 6.0
ObjectPropertyAssertion 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
DifferentIndividuals 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0
DataPropertyRange 1 6.00 12.000000 0.0 0.00 0.0 6.00 24.0
DataPropertyDomain 1 2.75 5.500000 0.0 0.00 0.0 2.75 11.0
AnnotationPropertyRangeOf 1 0.75 1.500000 0.0 0.00 0.0 0.75 3.0
AnnotationPropertyDomain 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
InverseFunctionalObjectProperty 1 0.50 1.000000 0.0 0.00 0.0 0.50 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 4 3672.00 1584.453218 1531.0 2954.50 4070.0 4787.50 5017.0
ObjectSomeValuesFrom 4 191.25 317.204850 12.0 12.75 44.0 222.50 665.0
ObjectAllValuesFrom 2 9.75 15.755951 0.0 0.00 3.0 12.75 33.0
ObjectComplementOf 2 8.50 14.456832 0.0 0.00 2.0 10.50 30.0
ObjectExactCardinality 2 0.50 0.577350 0.0 0.00 0.5 1.00 1.0
ObjectIntersectionOf 2 11.50 13.503086 0.0 0.00 10.0 21.50 26.0
ObjectMinCardinality 2 1.75 2.872281 0.0 0.00 0.5 2.25 6.0
ObjectUnionOf 2 12.75 19.956202 0.0 0.00 4.5 17.25 42.0
DataExactCardinality 1 1.50 3.000000 0.0 0.00 0.0 1.50 6.0
DataMinCardinality 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
DataSomeValuesFrom 1 6.50 13.000000 0.0 0.00 0.0 6.50 26.0
ObjectMaxCardinality 1 0.25 0.500000 0.0 0.00 0.0 0.25 1.0
ObjectOneOf 1 0.75 1.500000 0.0 0.00 0.0 0.75 3.0

OBO Score (Experimental)

ontology score score_dash score_impact
2 ngbo 0.430 0.860 0.0
0 bpdo 0.411 0.822 0.0
1 mcro 0.386 0.771 0.0
3 vario 0.155 0.311 0.0

OBO Score Summary

count mean std min 25% 50% 75% max
score 4.0 0.3455 0.128272 0.155 0.32825 0.3985 0.41575 0.43
score_dash 4.0 0.6910 0.255944 0.311 0.65600 0.7965 0.83150 0.86
score_impact 4.0 0.0000 0.000000 0.000 0.00000 0.0000 0.00000 0.00

OBO dependency graph